About
Search
Search for potential TFO target sequences
1. Select species and gene to search (Option A)
OR
select a sequence file to upload and search (Option B).
Option A.
Select species and gene.
Species
Homo sapiens
Mus musculus
Use the popup list to select to search by gene description, gene name (i.e. symbol), or Entrez Gene ID
and then enter search criterion in the text box. You can use an asterisk (*) as a wildcard if you wish
to perform a non-exact search on gene name. Gene description searches are always non-exact
and the criterion is treated as a phrase.
Gene
Gene name (symbol)
Gene description
Entrez Gene ID
Option B.
Alternatively, upload a sequence file to be searched. The sequence file may have a definition line (e.g. FASTA).
The file must be plain text, though it may be zipped if you like. The search is limited to 3 M bases.
2. Set parameters for your search.
TFO target sequence minimum length:
maximum length:
(leave blank for no maximum length)
TFO target sequence minimum %G:
TFO target sequence maximum allowable pyrimidine interruptions:
Search repeat-masked sequence: Yes
No
(applicable to Option A only)
Putative promoter region length:
bases
(applicable to Option A only)
Search
bases downstream of the gene
(applicable to Option A only)